CAFU – A Galaxy framework for exploring unmapped RNA-Seq data

CAFU

:: DESCRIPTION

CAFU is a Galaxy-based bioinformatics framework for comprehensive assembly and functional annotation of unmapped RNA-seq data from single- and mixed-species samples which integrates plenty of existing next-generation sequencing (NGS) analytical tools and our developed programs, and features an easy-to-use interface to manage, manipulate and most importantly, explore large-scale unmapped reads.

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::DEVELOPER

Ma Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

CAFU

:: MORE INFORMATION

Citation

Chen S, Ren C, Zhai J, Yu J, Zhao X, Li Z, Zhang T, Ma W, Han Z, Ma C.
CAFU: a Galaxy framework for exploring unmapped RNA-Seq data.
Brief Bioinform. 2020 Mar 23;21(2):676-686. doi: 10.1093/bib/bbz018. PMID: 30815667; PMCID: PMC7299299.

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