Bubbleparse
:: DESCRIPTION
Bubbleparse, a method for detecting variants directly from next-generation reads without a reference sequence. Bubbleparse uses the de Bruijn graph implementation in the Cortex framework as a basis and allows the user to identify bubbles in these graphs that represent polymorphisms, quickly, easily and sensitively.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Mac OsX
- C Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2013;8(3):e60058. doi: 10.1371/journal.pone.0060058. Epub 2013 Mar 25.
Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.
Leggett RM, Ramirez-Gonzalez RH, Verweij W, Kawashima CG, Iqbal Z, Jones JD, Caccamo M, Maclean D.