BrownDye software package consists of 2 simulation programs and about 25 auxiliary programs for processing data. For now, it computes the 2nd-order rate constant of the encounter of two rigid bodies composed of spheres moving according to Brownian dynamics.
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Huber, GA and McCammon, JA.
Browndye: A Software Package for Brownian Dynamics.
Computer Physics Communications 181, 1896-1905 (2010)