BisPin and BFAST-Gap
:: DESCRIPTION
BFAST-Gap is a modification of the BFAST short DNA read trimmer. BFAST-Gap adds functionality for Ion Torrent DNA reads.
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BisPin is a Python 2.7 program that uses BFAST-Gap (or BFAST) to map bisulfite-treated short DNA reads to a reference genome. It supports the hairpin construction strategy and rescores ambiguously mapped reads. Its default alignment scoring function is biologically motivated.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
BisPin and BFAST-Gap: Mapping Bisulfite-Treated Reads
Jacob Porter, Liqing Zhang
bioRxiv 284596; doi: https://doi.org/10.1101/284596