BioPAX2SBML – Translation of BioPAX into SBML including the Qualitative Models extension

BioPAX2SBML

:: DESCRIPTION

BioPAX2SBML is a  webtool. It is capable of properly translating BioPAX formats (Level 2 and 3) into SBML format (Level 3 Version 1 with qual) including reactions and relations in one model.

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::DEVELOPER

the Interfaculty Institute for Biomedical Informatics (IBMI)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Java

:: DOWNLOAD

  BioPAX2SBML

:: MORE INFORMATION

Citation

Büchel F, Wrzodek C, Mittag F, Dräger A, Eichner J, Rodriguez N, Le Novère N, and Zell A.
Qualitative translation of relations from BioPAX to SBML.
Bioinformatics (2012) 28 (20): 2648-2653.