The program bar_map computes a mapping between a series of barrier trees as computed by the barriers program. This of interest in particular in the context of co-transcriptional folding, where the one can compute barrier trees corresponding to different length partial transcripts; or for dynamic landscapes produced e.g. when varying the temperature.
Theoretical Biochemistry Group
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BarMap: RNA folding on dynamic energy landscapes
Ivo L Hofacker, Christoph Flamm, Christian Heine, Michael T Wolfinger, Gerik Scheuermann, Peter F Stadler
RNA, 2010, 16, 7, 1308-1316