ATACseqQC 1.14.4 – Quality Assessment of ATAC-seq data

ATACseqQC 1.14.4

:: DESCRIPTION

ATACseqQC is a Bioconductor package for easily generating various diagnostic plots to help researchers quickly assess the quality of their ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing) data. In addition, this package contains functions to preprocess aligned ATAC-seq data for subsequent peak calling.

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::DEVELOPER

Program in Gene Function and Expression@umassmed

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • BioConductor
  • R package

:: DOWNLOAD

ATACseqQC

:: MORE INFORMATION

Citation:

Ou J, Liu H, Yu J, Kelliher MA, Castilla LH, Lawson ND, Zhu LJ.
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
BMC Genomics. 2018 Mar 1;19(1):169. doi: 10.1186/s12864-018-4559-3. PMID: 29490630; PMCID: PMC5831847.

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