ATACseqQC 1.14.4
:: DESCRIPTION
ATACseqQC is a Bioconductor package for easily generating various diagnostic plots to help researchers quickly assess the quality of their ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing) data. In addition, this package contains functions to preprocess aligned ATAC-seq data for subsequent peak calling.
::DEVELOPER
Program in Gene Function and Expression@umassmed
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux/MacOsX
- BioConductor
- R package
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Ou J, Liu H, Yu J, Kelliher MA, Castilla LH, Lawson ND, Zhu LJ.
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
BMC Genomics. 2018 Mar 1;19(1):169. doi: 10.1186/s12864-018-4559-3. PMID: 29490630; PMCID: PMC5831847.