AlignBucket
:: DESCRIPTION
AlignBucket is a software for splitting a fasta file into smaller pieces suitable for alignment with BLAST. The constraint used to optimize the result is the required minimum alignment coverage.
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::DEVELOPER
Giuseppe Profiti , Piero Fariselli
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- g++
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2015 Jul 30. pii: btv451.
AlignBucket: a tool to speed up ‘all-against-all’ protein sequence alignments optimizing length constraints.
Profiti G, Fariselli P, Casadio R